SEED Subsystem: Isoprenoid Biosynthesis in Shewanella loihica PV-4

Experiments:

Role Gene Name  
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) Shew_2629
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) Shew_2771
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) Shew_1290 ispG
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) Shew_1208
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) Shew_1207
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) Shew_2915
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) Shew_1102
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Candidate gene for the hypothesized phosphomevalonate decarboxylase No genes
Dimethylallyltransferase (EC 2.5.1.1) No genes
Diphosphomevalonate decarboxylase (EC 4.1.1.33) No genes
Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) No genes
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34) No genes
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) No genes
Isopentenyl phosphate kinase No genes
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) No genes
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) No genes
Mevalonate kinase (EC 2.7.1.36) No genes
Phosphomevalonate kinase (EC 2.7.4.2) No genes
Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) No genes

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