SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Dechlorosoma suillum PS

Experiments:

Role Gene Name  
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF) Dsui_2763
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Dsui_1916
DNA topoisomerase I (EC 5.99.1.2) No genes
GTP-sensing transcriptional pleiotropic repressor codY No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication Dsui_0805
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9) Dsui_0816
  Dsui_1155
Peptide deformylase (EC 3.5.1.88) Dsui_0817
  Dsui_2697
Protein of unknown function DUF1447 No genes
Protein of unknown function Smg Dsui_0820
Protein serine/threonine phosphatase PrpC, regulation of stationary phase Dsui_1450
Ribonuclease HII (EC 3.1.26.4) Dsui_2680
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) Dsui_1908
  Dsui_3145
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) Dsui_0812
  Dsui_1543
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Dsui_2404
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Dsui_0221
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake Dsui_0819
Serine/threonine protein kinase PrkC, regulator of stationary phase Dsui_0697
  Dsui_1449
  Dsui_1522
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I No genes
Trk system potassium uptake protein TrkA Dsui_0808
Uncharacterized protein with LysM domain, COG1652 Dsui_0818
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising No genes
cytochrome d ubiquinol oxidase, subunit II-related protein No genes
tRNA:m(5)U-54 MTase gid No genes

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