SEED Subsystem: TCA Cycle in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) SO1930 sucA
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) No genes
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) SO1926 gltA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) SO2464
  SO2465
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) SO1931 sucB
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) SO2222
Fumarate hydratase class II (EC 4.2.1.2) No genes
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) No genes
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) SO1538
Malate dehydrogenase (EC 1.1.1.37) SO0770 mdh
Malate:quinone oxidoreductase (EC 1.1.5.4) No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) SO0398 frdA
  SO1928 sdhA
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) SO0399 frdB
  SO1929 sdhB
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) SO1933 sucD
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) SO1932 sucC
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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