SEED Subsystem: Ribosome biogenesis bacterial in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
16S rRNA processing protein RimM SO1358 rimM
Dimethyladenosine transferase (EC 2.1.1.-) No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
LSU m3Psi1915 methyltransferase RlmH SO1169
LSU m5C1962 methyltransferase RlmI SO1149
RNA pseudouridylate synthase, group 1 No genes
Ribonuclease E (EC 3.1.26.12) SO2785 rne
Ribonuclease M5 (EC 3.1.26.8) No genes
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) No genes
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) No genes
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) No genes
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) SO0395 prmA
Ribosomal protein S6 glutaminyl transferase SO0546 rimK-1
  SO2200
  SO2270 rimK-2
Ribosomal-protein-L7p-serine acetyltransferase No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) SO1160 rimI
Ribosomal-protein-S5p-alanine acetyltransferase SO1834
Similar to ribosomal large subunit pseudouridine synthase A No genes
Similar to ribosomal large subunit pseudouridine synthase A, group 2 No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type No genes
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type No genes
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type No genes
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase No genes
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) SO1359 trmD

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