SEED Subsystem: Nitrate and nitrite ammonification in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) No genes
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly SO0478 ccmF-2
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly SO0477 nrfF
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly SO0482 nrfG
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) SO3980
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) SO1663 napF
Ferredoxin-type protein NapG (periplasmic nitrate reductase) SO0847 napG
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein No genes
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit SO0845 napB
Nitrate/nitrite response regulator protein SO3982 narP
Nitrate/nitrite sensor protein (EC 2.7.3.-) SO3981 narQ
Nitrate/nitrite transporter No genes
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) No genes
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein SO0483 nrfC
NrfD protein SO0484 nrfD
  SO4568 nrfD-2
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) SO0848 napA
Polyferredoxin NapH (periplasmic nitrate reductase) SO0846 napH
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase beta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT No genes

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