SEED Subsystem: Lysine Biosynthesis DAP Pathway in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) No genes
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) SO1625 dapD
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) SO3070 asd
Aspartokinase (EC 2.7.2.4) SO3415 thrA
  SO3427
  SO3986 lysC
  SO4055 metL
Diaminopimelate decarboxylase (EC 4.1.1.20) SO4309 lysA
Diaminopimelate epimerase (EC 5.1.1.7) SO4308 dapF
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) No genes
Dihydrodipicolinate reductase (EC 1.3.1.26) No genes
Dihydrodipicolinate synthase (EC 4.2.1.52) No genes
L,L-diaminopimelate aminotransferase (EC 2.6.1.83) No genes
LL-diaminopimelate aminotransferase, predicted alternative No genes
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) No genes
N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-) No genes
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) No genes
N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) SO0617 argD
N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) No genes
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) SO2471 dapE

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