SEED Subsystem: Leucine Degradation and HMG-CoA Metabolism in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
Acetoacetyl-CoA synthetase (EC 6.2.1.16) SO1971
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16) No genes
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase No genes
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14) No genes
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) SO1679
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) SO2339
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) SO2340
Branched-chain amino acid aminotransferase (EC 2.6.1.42) SO0340 ilvE
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) SO2341
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) SO2464
  SO2465
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) SO1893 mvaB
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34) No genes
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) No genes
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) No genes
Leucine dehydrogenase (EC 1.4.1.9) SO2638 ldh
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) SO1894
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) SO1896 pccB-1
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) SO1895
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) SO1892 atoD
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) SO1891

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Or view this subsystem at the SEED (slow)