SEED Subsystem: Isoprenoid Biosynthesis in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267) SO1635 dxr
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7) SO1525 dxs
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1) SO3312 ispG
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) SO3437 ispF
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) SO3438 ispD
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) SO3836 ispE
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) SO3529 lytB
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Candidate gene for the hypothesized phosphomevalonate decarboxylase No genes
Dimethylallyltransferase (EC 2.5.1.1) SO1526 ispA
Diphosphomevalonate decarboxylase (EC 4.1.1.33) No genes
Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) No genes
Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34) No genes
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) No genes
Isopentenyl phosphate kinase No genes
Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) No genes
Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2) No genes
Mevalonate kinase (EC 2.7.1.36) No genes
Phosphomevalonate kinase (EC 2.7.4.2) No genes
Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) No genes

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