SEED Subsystem: DNA-replication in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) SO4364 recG
ATP-dependent DNA helicase RecQ SO1153
  SO4241 recQ
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA SO0008 dnaA
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) SO2431 ruvC
DNA polymerase I (EC 2.7.7.7) SO1549 xni
  SO4669 polA
DNA polymerase II (EC 2.7.7.7) SO1820 polB
DNA polymerase III alpha subunit (EC 2.7.7.7) SO1644 dnaE
  SO2245 dnaQ-1
DNA polymerase III beta subunit (EC 2.7.7.7) SO0009 dnaN
DNA polymerase III chi subunit (EC 2.7.7.7) SO3423 holC
DNA polymerase III delta prime subunit (EC 2.7.7.7) SO2612 holB
DNA polymerase III delta subunit (EC 2.7.7.7) SO1172 holA
DNA polymerase III epsilon subunit (EC 2.7.7.7) SO2559 dnaQ-2
  SO2855
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) SO2013 dnaX
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) SO1286 dnaG
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN SO3462 recN
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) SO2147 recD
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) SO2148 recB
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) SO2149 recC
Helicase PriA essential for oriC/DnaA-independent DNA replication SO4122 priA
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA SO2430 ruvA
Holliday junction DNA helicase RuvB SO2429 ruvB
Primosomal protein I No genes
Primosomal replication protein N SO3929 priB
Primosomal replication protein N prime prime SO1817
RecA protein SO3430 recA
Recombination protein RecR SO2015 recR
Replicative DNA helicase (EC 3.6.1.-) SO3917 dnaB
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) SO0952 recJ
Transcription-repair coupling factor SO2255 mfd

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