SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Shewanella oneidensis MR-1

Role	Gene	Name
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	SO2590
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	SO3285	cydB
DNA topoisomerase I (EC 5.99.1.2)	SO2705	topA
GTP-sensing transcriptional pleiotropic repressor codY	No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication	SO4122	priA
Hydrolase (HAD superfamily) in cluster with DUF1447	No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone	No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	SO0031	fmt
Peptide deformylase (EC 3.5.1.88)	SO0032	def-1
	SO1062	def-2
	SO2530	def-3
Protein of unknown function DUF1447	No genes
Protein of unknown function Smg	SO0035	smg
Protein serine/threonine phosphatase PrpC, regulation of stationary phase	No genes
Ribonuclease HII (EC 3.1.26.4)	SO1643	rnhB
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	SO3315
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	SO1160	rimI
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	SO0292	rpe
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	SO0034
Serine/threonine protein kinase PrkC, regulator of stationary phase	No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form	No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I	SO0036
Trk system potassium uptake protein TrkA	SO0029	trkA
	SO4281
Uncharacterized protein with LysM domain, COG1652	SO0033
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	No genes
Zn-dependent hydrolase, RNA-metabolising	No genes
cytochrome d ubiquinol oxidase, subunit II-related protein	No genes
tRNA:m(5)U-54 MTase gid	No genes