SEED Subsystem: Calvin-Benson cycle in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) No genes
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) SO3991 fbp
Fructose-1,6-bisphosphatase, type V, archaeal (EC 3.1.3.11) No genes
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) No genes
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) SO0933 fba
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) SO0538 gapA-1
  SO2345 gapA-2
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) SO2347 gapA-3
Phosphoglycerate kinase (EC 2.7.2.3) SO0932 pgk
Phosphoribulokinase (EC 2.7.1.19) No genes
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown SO0878 prkB
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex No genes
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase No genes
Ribose 5-phosphate isomerase A (EC 5.3.1.6) SO1150 rpiA
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) SO0292 rpe
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37) No genes
Transketolase (EC 2.2.1.1) SO0930 tkt
Transketolase, C-terminal section (EC 2.2.1.1) No genes
Transketolase, N-terminal section (EC 2.2.1.1) No genes
Triosephosphate isomerase (EC 5.3.1.1) SO1200 tpiA

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