SEED Subsystem: Arginine and Ornithine Degradation in Shewanella oneidensis MR-1

Experiments:

Role Gene Name  
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) SO_0887
Arginase (EC 3.5.3.1) No genes
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ No genes
Arginine N-succinyltransferase (EC 2.3.1.109) SO0618 astA
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) No genes
Arginine pathway regulatory protein ArgR, repressor of arg regulon SO0769 argR
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP No genes
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein No genes
Arginine/ornithine ABC transporter, permease protein AotM No genes
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD SO2798
  SO3931
  SO4708
Biosynthetic arginine decarboxylase (EC 4.1.1.19) SO1870 speA
Carbamate kinase (EC 2.7.2.2) No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) No genes
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) No genes
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) No genes
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) SO0277 argF
Ornithine cyclodeaminase (EC 4.3.1.12) No genes
Ornithine decarboxylase (EC 4.1.1.17) SO0314 speF
  SO4136
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) SO2706 astB
Succinylglutamate desuccinylase (EC 3.5.1.96) SO2338 astE
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) SO0619 astD
Succinylornithine transaminase (EC 2.6.1.81) SO0617 argD
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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