SEED Subsystem: DNA Repair Base Excision in Sphingomonas koreensis DSMZ 15582

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Ga0059261_3851
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Ga0059261_3858
DNA ligase (EC 6.5.1.2) Ga0059261_3775
DNA polymerase I (EC 2.7.7.7) Ga0059261_2244
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Ga0059261_0205
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Ga0059261_1818
Endonuclease III (EC 4.2.99.18) Ga0059261_2546
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Ga0059261_3586
Ku domain protein Ga0059261_3860
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Ga0059261_3089
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Ga0059261_2524
  Ga0059261_4119

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