SEED Subsystem: DNA Repair Base Excision in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC HSERO_RS11395
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD HSERO_RS11360
DNA ligase (EC 6.5.1.2) HSERO_RS10825
DNA polymerase I (EC 2.7.7.7) HSERO_RS02260
DNA polymerase II (EC 2.7.7.7) HSERO_RS12200
DNA-3-methyladenine glycosylase (EC 3.2.2.20) HSERO_RS07225
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) HSERO_RS08070
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) HSERO_RS19545
Ku domain protein HSERO_RS11355
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HSERO_RS13965
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 No genes

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