SEED Subsystem: DNA Repair Base Excision in Erwinia tracheiphila HP pepo 2.2

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) IJEDHG_17670 ligA
DNA polymerase I (EC 2.7.7.7) IJEDHG_00925
  IJEDHG_10990 polA
  IJEDHG_16095
  IJEDHG_17290 xni
DNA polymerase II (EC 2.7.7.7) IJEDHG_06070 polB
DNA-3-methyladenine glycosylase (EC 3.2.2.20) IJEDHG_04870
  IJEDHG_09870 tag
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) IJEDHG_25070 nth
Endonuclease VIII IJEDHG_02175
Exodeoxyribonuclease I (EC 3.1.11.1) IJEDHG_01935 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) IJEDHG_07800
  IJEDHG_07805
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) IJEDHG_03185 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 IJEDHG_26910 ung

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