SEED Subsystem: DNA Repair Base Excision in Escherichia coli Nissle 1917

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) ECOLIN_RS13855
DNA polymerase I (EC 2.7.7.7) ECOLIN_RS15600
  ECOLIN_RS22270
DNA polymerase II (EC 2.7.7.7) ECOLIN_RS00320
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ECOLIN_RS20310
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ECOLIN_RS12170
Endonuclease III (EC 4.2.99.18) ECOLIN_RS09110
Endonuclease VIII ECOLIN_RS03820
Exodeoxyribonuclease I (EC 3.1.11.1) ECOLIN_RS11910
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ECOLIN_RS20715
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ECOLIN_RS16115
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ECOLIN_RS14600

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Or view this subsystem at the SEED (slow)