SEED Subsystem: Proline, 4-hydroxyproline uptake and utilization in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name  
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) ABZR86_RS20490
4-hydroxyproline epimerase (EC 5.1.1.8) ABZR86_RS20470
Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster No genes
Amino acid permease in 4-hydroxyproline catabolic gene cluster No genes
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster No genes
D-amino-acid oxidase (EC 1.4.3.3) ABZR86_RS20475
D-proline reductase, 23 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 26 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 45 kDa subunit (EC 1.21.4.1) No genes
Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) ABZR86_RS07010
  ABZR86_RS12940
Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster No genes
Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain ABZR86_RS20480
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) ABZR86_RS20495
L-Proline/Glycine betaine transporter ProP ABZR86_RS01895
  ABZR86_RS20395
Microbial collagenase, secreted (EC 3.4.24.3) No genes
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues] No genes
Predicted 4-hydroxyproline dipeptidase ABZR86_RS20500
Predicted regulator PutR for proline utilization, GntR family No genes
ProQ: influences osmotic activation of compatible solute ProP No genes
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) ABZR86_RS12940
Proline iminopeptidase (EC 3.4.11.5) ABZR86_RS09625
  ABZR86_RS16545
  ABZR86_RS21390
Proline racemase (EC 5.1.1.4) No genes
Proline-specific permease proY No genes
Proline/sodium symporter PutP (TC 2.A.21.2.1) No genes
PutR, transcriptional activator of PutA and PutP No genes
Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster No genes
Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster ABZR86_RS20485
Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) ABZR86_RS17305
Transcriptional repressor of PutA and PutP No genes
Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) No genes
putPA fragment of control region No genes

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