SEED Subsystem: DNA Repair Base Excision in Dyella japonica UNC79MFTsu3.2

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABZR86_RS02935
DNA ligase (EC 6.5.1.2) ABZR86_RS01875
DNA polymerase I (EC 2.7.7.7) ABZR86_RS17015
  ABZR86_RS22160
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABZR86_RS01545
  ABZR86_RS15805
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABZR86_RS20915
Endonuclease III (EC 4.2.99.18) ABZR86_RS08185
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) ABZR86_RS01905
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABZR86_RS13335
Ku domain protein ABZR86_RS02930
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR86_RS02800
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABZR86_RS12580

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