SEED Subsystem: Polyhydroxybutyrate metabolism in Dinoroseobacter shibae DFL-12

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) Dshi_0835
  Dshi_2825
  Dshi_3826
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Dshi_0214
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Dshi_0835
  Dshi_3826
3-ketoacyl-CoA thiolase (EC 2.3.1.16) No genes
Acetoacetyl-CoA reductase (EC 1.1.1.36) No genes
Acetoacetyl-CoA synthetase (EC 6.2.1.16) Dshi_3403
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) Dshi_1544
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) Dshi_1048
  Dshi_1604
  Dshi_1753
  Dshi_3329
  Dshi_3370
  Dshi_3826
Intracellular PHB depolymerase (EC 3.1.1.-) No genes
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase Dshi_0428
  Dshi_2233
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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