SEED Subsystem: Oxidative stress in Dinoroseobacter shibae DFL-12

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein Dshi_0745
  Dshi_2522
Catalase (EC 1.11.1.6) Dshi_3801
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR No genes
Ferroxidase (EC 1.16.3.1) Dshi_3839
  Dshi_3912
  Dshi_4223
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator Dshi_0727
  Dshi_2523
  Dshi_3802
  Dshi_4009
Iron-binding ferritin-like antioxidant protein Dshi_3839
  Dshi_3912
  Dshi_4223
Iron-responsive regulator Irr Dshi_1011
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR Dshi_2306
NnrS protein involved in response to NO Dshi_0494
  Dshi_1450
  Dshi_2303
  Dshi_3182
Non-specific DNA-binding protein Dps Dshi_3839
  Dshi_3912
  Dshi_4223
Organic hydroperoxide resistance protein No genes
Organic hydroperoxide resistance transcriptional regulator Dshi_0758
Paraquat-inducible protein A Dshi_2128
Paraquat-inducible protein B No genes
Peroxidase (EC 1.11.1.7) Dshi_3801
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS Dshi_2810
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) Dshi_1067
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR Dshi_1703
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family Dshi_2521
  Dshi_2528
  Dshi_3110
  Dshi_3189
  Dshi_3191
  Dshi_3270
  Dshi_3764
  Dshi_4040
transcriptional regulator, Fur family No genes

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