SEED Subsystem: Denitrification in Dinoroseobacter shibae DFL-12

Experiments:

Role Gene Name  
Copper-containing nitrite reductase (EC 1.7.2.1) No genes
Cytochrome cd1 nitrite reductase (EC:1.7.2.1) Dshi_3180
Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) No genes
Nitric oxide -responding transcriptional regulator NnrR (Crp/Fnr family) No genes
Nitric oxide reductase activation protein NorD Dshi_3186
Nitric oxide reductase activation protein NorE Dshi_3187
Nitric oxide reductase activation protein NorQ Dshi_3185
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent No genes
Nitric-oxide reductase subunit B (EC 1.7.99.7) Dshi_3184
Nitric-oxide reductase subunit C (EC 1.7.99.7) Dshi_3183
Nitrite reductase accessory protein NirV No genes
Nitrous oxide reductase maturation periplasmic protein NosX Dshi_0685
  Dshi_3168
  Dshi_3199
Nitrous oxide reductase maturation protein NosD Dshi_3195
Nitrous oxide reductase maturation protein NosF (ATPase) Dshi_3196
Nitrous oxide reductase maturation protein NosR Dshi_0686
  Dshi_3181
  Dshi_3193
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL Dshi_3198
Nitrous oxide reductase maturation transmembrane protein NosY Dshi_3197
Nitrous-oxide reductase (EC 1.7.99.6) Dshi_3194
NnrS protein involved in response to NO Dshi_0494
  Dshi_1450
  Dshi_2303
  Dshi_3182
NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) No genes
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) Dshi_0540

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