SEED Subsystem: DNA Repair Base Excision in Dinoroseobacter shibae DFL-12

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Dshi_2589
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) Dshi_1509
DNA polymerase I (EC 2.7.7.7) Dshi_2909
  Dshi_3653
DNA polymerase II (EC 2.7.7.7) Dshi_0055
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Dshi_3064
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Dshi_1689
Endonuclease III (EC 4.2.99.18) Dshi_3023
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Dshi_3369
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Dshi_2275
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 No genes

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Or view this subsystem at the SEED (slow)