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SEED Subsystem: ZZ gjo need homes in
Cupriavidus basilensis FW507-4G11
Experiments:
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Role
Gene
Name
AMP/CMP kinase AK6
No genes
Cephalosporin hydroxylase
No genes
Cob(I)alamin adenosyltransferase fragment
No genes
GTP-binding protein RBG1
No genes
GTP-binding protein, gtp1/obg family
No genes
Hydroxylamine oxidoreductase precursor (
EC 1.7.3.4
)
No genes
Lipid A export ATP-binding/permease protein MsbA
RR42
_RS02535
RR42
_RS04670
RR42
_RS14650
LysR family transcriptional regulator clustered with dicarboxylate transport
No genes
MFS superfamily export protein YceL
No genes
Microcompartment protein protein similar to PduA/PduJ
No genes
Mitochondrial processing peptidase-like protein (
EC 3.4.24.64
)
No genes
Na+/H+ antiporter
RR42
_RS15170
RR42
_RS16720
RR42
_RS25080
Na+/H+ antiporter NhaB
No genes
Peptidyl-tRNA hydrolase, archaeal type (
EC 3.1.1.29
)
No genes
Phage-encoded chromosome degrading nuclease YokF
No genes
Phosphatidyl-N-methylethanolamine N-methyltransferase (
EC 2.1.1.71
)
No genes
Phosphatidylcholine synthase (
EC 2.7.8.24
)
No genes
Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated
No genes
Pole remodelling regulatory diguanylate cyclase
RR42
_RS34710
Proposed peptidoglycan lipid II flippase MurJ
RR42
_RS17190
Protein of unknown function DUF81
RR42
_RS16160
Protein of unknown function DUF81, type 2
No genes
Protein of unknown function YceH
No genes
Protein secretion chaperonin CsaA
No genes
Proton/aspartate symport protein
No genes
Proton/glutamate symport protein
No genes
Putative GTP-binding protien TM0445
No genes
Putative heat shock protein YegD
RR42
_RS03720
Putative membrane protein YfcA
RR42
_RS20255
Putative permease PerM (= YfgO)
No genes
Putative permease often clustered with de novo purine synthesis
No genes
Pyrrolidone-carboxylate peptidase (
EC 3.4.19.3
)
RR42
_RS00665
Quinone oxidoreductase (
EC 1.6.5.5
)
RR42
_RS04775
RR42
_RS05490
RR42
_RS09380
RR42
_RS11055
RR42
_RS13205
RR42
_RS24090
RR42
_RS29065
RR42
_RS30095
RR42
_RS34065
RR42
_RS34670
RNase L inhibitor
No genes
Sodium/glutamate symport protein
No genes
Transcription accessory protein (S1 RNA-binding domain)
RR42
_RS07565
Tyrosine-specific transport protein
No genes
Uncharacterized ATP-dependent helicase MJ0294
No genes
Virulence factor MviM
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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