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SEED Subsystem: Urea decomposition in
Cupriavidus basilensis FW507-4G11
Experiments:
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Role
Gene
Name
Allophanate hydrolase (
EC 3.5.1.54
)
RR42
_RS26665
Eukaryotic-type low-affinity urea transporter
No genes
HupE-UreJ family metal transporter
RR42
_RS05665
Nickel transporter UreH
No genes
Partial urea carboxylase (
EC 6.3.4.6
)
No genes
Partial urea carboxylase 2 (
EC 6.3.4.6
)
No genes
Urea ABC transporter, ATPase protein UrtD
RR42
_RS05645
RR42
_RS20285
Urea ABC transporter, ATPase protein UrtE
RR42
_RS05650
Urea ABC transporter, permease protein UrtB
RR42
_RS05635
Urea ABC transporter, permease protein UrtC
RR42
_RS05640
Urea ABC transporter, urea binding protein
RR42
_RS05630
Urea carboxylase (
EC 6.3.4.6
)
RR42
_RS26670
Urea carboxylase-related ABC transporter, ATPase protein
RR42
_RS16930
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
RR42
_RS16940
Urea carboxylase-related ABC transporter, permease protein
No genes
Urea carboxylase-related amino acid permease
No genes
Urea carboxylase-related aminomethyltransferase (
EC 2.1.2.10
)
No genes
Urea channel UreI
RR42
_RS12390
Urease accessory protein UreD
RR42
_RS05655
Urease accessory protein UreE
RR42
_RS05680
Urease accessory protein UreF
RR42
_RS05685
Urease accessory protein UreG
RR42
_RS05690
Urease alpha subunit (
EC 3.5.1.5
)
RR42
_RS05675
Urease beta subunit (
EC 3.5.1.5
)
RR42
_RS05670
Urease gamma subunit (
EC 3.5.1.5
)
RR42
_RS05660
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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