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SEED Subsystem: Type IV pilus in
Cupriavidus basilensis FW507-4G11
Experiments:
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Role
Gene
Name
3-dehydroquinate synthase (
EC 4.2.3.4
)
RR42
_RS19005
Fimbrial assembly protein FimB
No genes
Leader peptidase (Prepilin peptidase) (
EC 3.4.23.43
)
RR42
_RS17990
Multimodular transpeptidase-transglycosylase (
EC 2.4.1.129
) (EC 3.4.-.-)
RR42
_RS03775
RR42
_RS16540
RR42
_RS19040
RR42
_RS20345
RR42
_RS22420
RR42
_RS34290
N-methyltransferase (EC 2.1.1.-)
RR42
_RS17990
PilS cassette
No genes
Twitching motility protein PilT
RR42
_RS17345
RR42
_RS17350
Two-component sensor PilS
RR42
_RS17875
Type IV fimbriae expression regulatory protein PilR
RR42
_RS17870
Type IV fimbrial assembly protein PilC
RR42
_RS17985
RR42
_RS35975
Type IV fimbrial assembly, ATPase PilB
RR42
_RS17980
Type IV fimbrial biogenesis protein FimT
RR42
_RS15550
RR42
_RS16865
Type IV fimbrial biogenesis protein PilV
RR42
_RS16870
Type IV fimbrial biogenesis protein PilW
RR42
_RS15530
RR42
_RS16875
Type IV fimbrial biogenesis protein PilX
RR42
_RS16880
Type IV fimbrial biogenesis protein PilY1
RR42
_RS15515
RR42
_RS15540
RR42
_RS16885
Type IV fimbrial biogenesis protein PilY2
No genes
Type IV pilin PilA
No genes
Type IV pilus biogenesis protein PilE
RR42
_RS15545
RR42
_RS16860
Type IV pilus biogenesis protein PilM
RR42
_RS19035
Type IV pilus biogenesis protein PilN
RR42
_RS19030
Type IV pilus biogenesis protein PilO
RR42
_RS19025
Type IV pilus biogenesis protein PilP
RR42
_RS19020
Type IV pilus biogenesis protein PilQ
RR42
_RS19015
type 4 fimbrial biogenesis protein FimU
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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