Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
SEED Subsystem: Transcription initiation, bacterial sigma factors in
Cupriavidus basilensis FW507-4G11
Experiments:
Add
Role
Gene
Name
RNA polymerase heat shock sigma factor SigI
No genes
RNA polymerase principal sigma factor HrdA
No genes
RNA polymerase principal sigma factor HrdC
No genes
RNA polymerase principal sigma factor HrdD
No genes
RNA polymerase sigma factor RpoD
RR42
_RS10750
RR42
_RS14965
RNA polymerase sigma factor RpoE
RR42
_RS14080
RNA polymerase sigma factor RpoH
RR42
_RS01930
RNA polymerase sigma factor RpoH-related protein
No genes
RNA polymerase sigma factor RpoH-related protein RpoH2
No genes
RNA polymerase sigma factor RpoH-related protein RpoH3
No genes
RNA polymerase sigma factor RpoS
RR42
_RS13185
RNA polymerase sigma factor SigB
No genes
RNA polymerase sigma factor SigV
No genes
RNA polymerase sigma factor SigW
No genes
RNA polymerase sigma factor SigZ
No genes
RNA polymerase sigma factor for flagellar operon
RR42
_RS35750
RNA polymerase sigma-54 factor RpoN
RR42
_RS02085
RR42
_RS32410
RNA polymerase sigma-70 factor
RR42
_RS05730
RNA polymerase sporulation specific sigma factor SigE
No genes
RNA polymerase sporulation specific sigma factor SigF
No genes
RNA polymerase sporulation specific sigma factor SigG
No genes
RNA polymerase sporulation specific sigma factor SigH
No genes
RNA polymerase sporulation specific sigma factor SigK
No genes
Serine protease precursor MucD/AlgY associated with sigma factor RpoE
No genes
Sigma factor RpoE negative regulatory protein RseA
RR42
_RS14075
Sigma factor RpoE negative regulatory protein RseB precursor
RR42
_RS14070
Sigma factor RpoE regulatory protein RseC
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
Go
Or view this subsystem at the SEED
(slow)