SEED Subsystem: TCA Cycle in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) RR42_RS12940
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) RR42_RS23515
Aconitate hydratase X, predicted RR42_RS29680
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) RR42_RS09325
  RR42_RS10505
  RR42_RS14430
  RR42_RS32385
  RR42_RS36245
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) RR42_RS34380
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) RR42_RS12930
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) RR42_RS07380
  RR42_RS21770
  RR42_RS26115
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) RR42_RS12935
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) RR42_RS13905
  RR42_RS27740
Fumarate hydratase class II (EC 4.2.1.2) RR42_RS33090
  RR42_RS37365
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) RR42_RS17135
  RR42_RS22955
  RR42_RS29535
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) RR42_RS02230
  RR42_RS14465
  RR42_RS29130
Malate:quinone oxidoreductase (EC 1.1.5.4) No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) RR42_RS02185
  RR42_RS14445
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) RR42_RS02215
  RR42_RS14440
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) RR42_RS03100
  RR42_RS31380
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) RR42_RS03095
  RR42_RS31375
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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