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SEED Subsystem: Ribosome LSU bacterial in
Cupriavidus basilensis FW507-4G11
Experiments:
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Role
Gene
Name
Firmicutes ribosomal L7Ae family protein
No genes
LSU ribosomal protein L10p (P0)
RR42
_RS19330
LSU ribosomal protein L11p (L12e)
RR42
_RS19340
LSU ribosomal protein L13p (L13Ae)
RR42
_RS02625
LSU ribosomal protein L14p (L23e)
RR42
_RS19205
LSU ribosomal protein L15p (L27Ae)
RR42
_RS19160
LSU ribosomal protein L16p (L10e)
RR42
_RS19220
LSU ribosomal protein L17p
RR42
_RS19120
LSU ribosomal protein L18p (L5e)
RR42
_RS19175
LSU ribosomal protein L19p
RR42
_RS04635
LSU ribosomal protein L1p (L10Ae)
RR42
_RS19335
LSU ribosomal protein L20p
RR42
_RS06615
LSU ribosomal protein L21p
RR42
_RS17955
LSU ribosomal protein L22p (L17e)
RR42
_RS19230
LSU ribosomal protein L23p (L23Ae)
RR42
_RS19245
LSU ribosomal protein L24p (L26e)
RR42
_RS19200
LSU ribosomal protein L25p
RR42
_RS02010
LSU ribosomal protein L27p
RR42
_RS17950
LSU ribosomal protein L28p
No genes
LSU ribosomal protein L29p (L35e)
RR42
_RS19215
LSU ribosomal protein L2p (L8e)
RR42
_RS19240
LSU ribosomal protein L30p (L7e)
RR42
_RS19165
LSU ribosomal protein L31p
RR42
_RS13325
LSU ribosomal protein L32p
RR42
_RS14120
LSU ribosomal protein L33p
No genes
LSU ribosomal protein L34p
RR42
_RS20840
LSU ribosomal protein L35p
RR42
_RS06610
LSU ribosomal protein L36p
No genes
LSU ribosomal protein L3p (L3e)
RR42
_RS19255
LSU ribosomal protein L4p (L1e)
RR42
_RS19250
LSU ribosomal protein L5p (L11e)
RR42
_RS19195
LSU ribosomal protein L6p (L9e)
RR42
_RS19180
LSU ribosomal protein L7/L12 (P1/P2)
RR42
_RS19325
LSU ribosomal protein L9p
RR42
_RS12590
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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