SEED Subsystem: Polyhydroxybutyrate metabolism in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) RR42_RS02510
  RR42_RS05760
  RR42_RS10265
  RR42_RS11095
  RR42_RS22630
  RR42_RS28325
  RR42_RS29465
  RR42_RS31050
  RR42_RS35270
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) RR42_RS01610
  RR42_RS24305
  RR42_RS33580
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) RR42_RS10265
  RR42_RS11095
  RR42_RS22630
  RR42_RS28325
  RR42_RS29465
  RR42_RS35270
3-ketoacyl-CoA thiolase (EC 2.3.1.16) RR42_RS00885
  RR42_RS11085
  RR42_RS16595
  RR42_RS22625
  RR42_RS37020
Acetoacetyl-CoA reductase (EC 1.1.1.36) RR42_RS07615
  RR42_RS26085
Acetoacetyl-CoA synthetase (EC 6.2.1.16) RR42_RS10085
  RR42_RS15595
  RR42_RS26915
  RR42_RS29475
  RR42_RS36095
Acetyl-CoA acetyltransferase (EC 2.3.1.9) RR42_RS24970
  RR42_RS28055
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) RR42_RS12465
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) RR42_RS01235
  RR42_RS06570
  RR42_RS10725
  RR42_RS10960
D-beta-hydroxybutyrate permease RR42_RS10730
  RR42_RS17790
Enoyl-CoA hydratase (EC 4.2.1.17) RR42_RS00730
  RR42_RS02510
  RR42_RS02525
  RR42_RS03015
  RR42_RS04550
  RR42_RS05755
  RR42_RS10250
  RR42_RS10265
  RR42_RS10270
  RR42_RS11095
  RR42_RS12500
  RR42_RS12795
  RR42_RS13545
  RR42_RS16175
  RR42_RS16790
  RR42_RS18250
  RR42_RS19805
  RR42_RS22630
  RR42_RS22680
  RR42_RS23295
  RR42_RS23450
  RR42_RS23710
  RR42_RS24355
  RR42_RS24895
  RR42_RS25480
  RR42_RS25525
  RR42_RS25900
  RR42_RS28050
  RR42_RS28325
  RR42_RS28330
  RR42_RS29425
  RR42_RS29465
  RR42_RS29940
  RR42_RS29945
  RR42_RS31580
  RR42_RS31935
  RR42_RS31945
  RR42_RS34175
  RR42_RS34180
  RR42_RS34905
  RR42_RS35270
  RR42_RS36495
Intracellular PHB depolymerase (EC 3.1.1.-) RR42_RS05985
  RR42_RS26055
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase RR42_RS07605
  RR42_RS11650
  RR42_RS26095
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter RR42_RS10710
  RR42_RS27955
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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