SEED Subsystem: Nitrate and nitrite ammonification in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) RR42_RS31800
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein RR42_RS01945
Nitrate ABC transporter, nitrate-binding protein RR42_RS01955
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein RR42_RS08760
  RR42_RS08905
Nitrate/nitrite sensor protein (EC 2.7.3.-) RR42_RS08765
  RR42_RS08900
Nitrate/nitrite transporter RR42_RS04270
  RR42_RS07980
  RR42_RS08825
  RR42_RS08830
  RR42_RS08910
  RR42_RS10425
  RR42_RS10975
  RR42_RS21610
  RR42_RS22320
  RR42_RS22470
  RR42_RS24360
  RR42_RS25070
  RR42_RS25560
  RR42_RS26825
  RR42_RS31780
  RR42_RS33715
  RR42_RS33945
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) RR42_RS31785
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) RR42_RS31790
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) RR42_RS08820
  RR42_RS08915
Respiratory nitrate reductase beta chain (EC 1.7.99.4) RR42_RS08815
  RR42_RS08920
Respiratory nitrate reductase delta chain (EC 1.7.99.4) RR42_RS08810
  RR42_RS08925
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) RR42_RS08805
  RR42_RS08930
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT RR42_RS01960

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