Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
SEED Subsystem: DNA-replication in
Cupriavidus basilensis FW507-4G11
Experiments:
Add
Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
RR42
_RS17390
ATP-dependent DNA helicase RecQ
RR42
_RS19310
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
RR42
_RS00005
RR42
_RS17225
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
RR42
_RS02715
DNA polymerase I (
EC 2.7.7.7
)
RR42
_RS15050
RR42
_RS26565
DNA polymerase II (
EC 2.7.7.7
)
RR42
_RS09335
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
RR42
_RS04650
RR42
_RS25820
RR42
_RS32795
DNA polymerase III beta subunit (
EC 2.7.7.7
)
RR42
_RS00010
DNA polymerase III chi subunit (
EC 2.7.7.7
)
RR42
_RS16220
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
RR42
_RS10900
DNA polymerase III delta subunit (
EC 2.7.7.7
)
RR42
_RS17535
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
RR42
_RS13585
RR42
_RS36200
DNA polymerase III psi subunit (
EC 2.7.7.7
)
No genes
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
RR42
_RS13285
DNA polymerase III theta subunit (
EC 2.7.7.7
)
No genes
DNA primase (EC 2.7.7.-)
RR42
_RS14975
DNA primase (EC 2.7.7.-), phage-associated
No genes
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
RR42
_RS05910
DNA replication protein DnaC
No genes
DNA replication terminus site-binding protein
No genes
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
No genes
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
No genes
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication
RR42
_RS20130
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
RR42
_RS02705
Holliday junction DNA helicase RuvB
RR42
_RS02700
Primosomal protein I
No genes
Primosomal replication protein N
RR42
_RS12600
Primosomal replication protein N prime prime
No genes
RecA protein
RR42
_RS03080
Recombination protein RecR
RR42
_RS13270
Replicative DNA helicase (EC 3.6.1.-)
RR42
_RS12585
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
RR42
_RS06090
Transcription-repair coupling factor
RR42
_RS07845
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
Go
Or view this subsystem at the SEED
(slow)