SEED Subsystem: DNA Repair Base Excision in Castellaniella sp019104865 MT123

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) ABCV34_RS08555
DNA polymerase I (EC 2.7.7.7) ABCV34_RS02195
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABCV34_RS04525
  ABCV34_RS06670
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABCV34_RS00390
  ABCV34_RS01600
Endonuclease III (EC 4.2.99.18) ABCV34_RS08465
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABCV34_RS09265
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABCV34_RS05005
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABCV34_RS15100

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