SEED Subsystem: DNA-replication in Phocaeicola vulgatus CL09T03C04

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) HMPREF1058_RS08295
ATP-dependent DNA helicase RecQ HMPREF1058_RS03075
  HMPREF1058_RS14585
  HMPREF1058_RS17215
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA HMPREF1058_RS07580
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) HMPREF1058_RS01800
DNA polymerase I (EC 2.7.7.7) HMPREF1058_RS11500
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) HMPREF1058_RS13930
DNA polymerase III beta subunit (EC 2.7.7.7) HMPREF1058_RS18240
DNA polymerase III chi subunit (EC 2.7.7.7) No genes
DNA polymerase III delta prime subunit (EC 2.7.7.7) HMPREF1058_RS13645
DNA polymerase III delta subunit (EC 2.7.7.7) HMPREF1058_RS03960
DNA polymerase III epsilon subunit (EC 2.7.7.7) HMPREF1058_RS10195
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) HMPREF1058_RS15350
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) HMPREF1058_RS08255
  HMPREF1058_RS18165
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN HMPREF1058_RS18225
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication HMPREF1058_RS12720
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA HMPREF1058_RS00595
Holliday junction DNA helicase RuvB HMPREF1058_RS11890
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein HMPREF1058_RS15965
Recombination protein RecR HMPREF1058_RS18560
Replicative DNA helicase (EC 3.6.1.-) HMPREF1058_RS03520
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HMPREF1058_RS14835
Transcription-repair coupling factor HMPREF1058_RS15450

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