SEED Subsystem: DNA Repair Base Excision in Paraburkholderia graminis OAS925

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC ABIE53_005970
  ABIE53_005971
  ABIE53_005972
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABIE53_000212
  ABIE53_002080
DNA ligase (EC 6.5.1.2) ABIE53_002511
DNA polymerase I (EC 2.7.7.7) ABIE53_004852
DNA polymerase II (EC 2.7.7.7) ABIE53_004018
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABIE53_000137
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABIE53_000314
  ABIE53_002706
  ABIE53_006419
Endonuclease III (EC 4.2.99.18) ABIE53_001423
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABIE53_000711
Ku domain protein ABIE53_002079
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABIE53_002771
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABIE53_003645

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