| Role | Gene | Name | |
|---|
| CI-like repressor, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Cro-like repressor, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Degenerate integrase, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Ferrichrome-binding periplasmic protein precursor in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) | BPHYT_RS12010 | | |
| Heat shock protein 60 family chaperone GroEL | BPHYT_RS04200 | | |
| Hypothetical MW0753 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical MW0754 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAR0365 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAR0369 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAR0371 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAR0372 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAR0385 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0786 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0787 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0788 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0789 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0790 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0791 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0792 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0793 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0794 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0795 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0796 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0797 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0798 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0799 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0801 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV0808 homolog, near pathogenicity islands SaPI att-site | No genes | | |
| Hypothetical SAV2026 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Hypothetical SAV2027 homolog in superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Integrase, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Methionine ABC transporter substrate-binding protein | BPHYT_RS02715 | | |
| | BPHYT_RS14810 | | |
| | BPHYT_RS22210 | | |
| | BPHYT_RS22525 | | |
| Putative DNA helicase, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Putative primase, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Putative terminase, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| SSU ribosomal protein S18p | No genes | | |
| Secreted protein Ear, superantigen-encoding pathogenicity islands SaPI | No genes | | |
| Superantigen enterotoxin SEB | No genes | | |
| Superantigen enterotoxin SEK | No genes | | |
| Superantigen enterotoxin SEL | No genes | | |
| Toxic shock syndrome toxin 1 (TSST-1) | No genes | | |
| tmRNA-binding protein SmpB | BPHYT_RS12040 | | |