SEED Subsystem: Serine-glyoxylate cycle in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) BPHYT_RS02230
  BPHYT_RS09565
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) BPHYT_RS18705
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) BPHYT_RS18615
Acetoacetyl-CoA reductase (EC 1.1.1.36) BPHYT_RS00860
  BPHYT_RS09155
  BPHYT_RS27640
  BPHYT_RS29090
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) No genes
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) BPHYT_RS19980
  BPHYT_RS27440
  BPHYT_RS33920
Enolase (EC 4.2.1.11) BPHYT_RS12675
Formate--tetrahydrofolate ligase (EC 6.3.4.3) No genes
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) BPHYT_RS06985
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) BPHYT_RS09440
Isocitrate lyase (EC 4.1.3.1) BPHYT_RS12285
  BPHYT_RS25670
Malate dehydrogenase (EC 1.1.1.37) BPHYT_RS27110
  BPHYT_RS28460
  BPHYT_RS33955
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) BPHYT_RS12865
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) BPHYT_RS23275
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) BPHYT_RS23265
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) BPHYT_RS12865
Methylmalonyl-CoA mutase (EC 5.4.99.2) BPHYT_RS02085
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) No genes
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) BPHYT_RS01260
  BPHYT_RS03725
  BPHYT_RS25180
Serine--glyoxylate aminotransferase (EC 2.6.1.45) BPHYT_RS34440
Serine--pyruvate aminotransferase (EC 2.6.1.51) BPHYT_RS03855
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase BPHYT_RS29105
  BPHYT_RS29375
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) BPHYT_RS33935
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) BPHYT_RS33930
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) BPHYT_RS16340
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) BPHYT_RS16345
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) BPHYT_RS13675
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) BPHYT_RS13670
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein BPHYT_RS34800
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase BPHYT_RS28865
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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Or view this subsystem at the SEED (slow)