SEED Subsystem: Oxidative stress in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein BPHYT_RS03775
  BPHYT_RS07765
  BPHYT_RS20845
Catalase (EC 1.11.1.6) BPHYT_RS03475
  BPHYT_RS10310
  BPHYT_RS24755
  BPHYT_RS26790
  BPHYT_RS33265
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR BPHYT_RS16810
  BPHYT_RS35640
Ferroxidase (EC 1.16.3.1) BPHYT_RS03480
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator BPHYT_RS00545
  BPHYT_RS03470
  BPHYT_RS10655
Iron-binding ferritin-like antioxidant protein BPHYT_RS03480
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR BPHYT_RS08985
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps BPHYT_RS03480
Organic hydroperoxide resistance protein BPHYT_RS11610
  BPHYT_RS11895
  BPHYT_RS20600
  BPHYT_RS33660
Organic hydroperoxide resistance transcriptional regulator BPHYT_RS20585
  BPHYT_RS33655
Paraquat-inducible protein A BPHYT_RS03450
  BPHYT_RS03455
Paraquat-inducible protein B BPHYT_RS03460
  BPHYT_RS10475
Peroxidase (EC 1.11.1.7) BPHYT_RS10310
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) BPHYT_RS06325
  BPHYT_RS09260
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) BPHYT_RS15860
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR BPHYT_RS16125
  BPHYT_RS24300
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family BPHYT_RS05355
  BPHYT_RS21215
  BPHYT_RS27505
  BPHYT_RS33495
  BPHYT_RS34870
transcriptional regulator, Fur family No genes

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