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SEED Subsystem: Folate Biosynthesis in
Burkholderia phytofirmans PsJN
Experiments:
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Role
Gene
Name
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (
EC 2.7.6.3
)
BPHYT
_RS03615
5-formyltetrahydrofolate cyclo-ligase (
EC 6.3.3.2
)
BPHYT
_RS18615
5-nucleotidase SurE (
EC 3.1.3.5
)
BPHYT
_RS09100
BPHYT
_RS26570
6-pyruvoyl tetrahydrobiopterin synthase (
EC 4.2.3.12
)
No genes
ATPase component of general energizing module of ECF transporters
No genes
Alternative Folylglutamate Synthase
No genes
Alternative dihydrofolate reductase 2
No genes
Alternative dihydrofolate reductase 3
BPHYT
_RS16300
Aminodeoxychorismate lyase (
EC 4.1.3.38
)
BPHYT
_RS03600
COG0488: ATPase components of ABC transporters with duplicated ATPase domains
BPHYT
_RS05925
Dihydrofolate reductase (
EC 1.5.1.3
)
BPHYT
_RS06365
BPHYT
_RS14700
Dihydrofolate synthase (
EC 6.3.2.12
)
No genes
Dihydroneopterin aldolase (
EC 4.1.2.25
)
BPHYT
_RS18575
Dihydroneopterin triphosphate epimerase
No genes
Dihydroneopterin triphosphate pyrophosphohydolase
No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2
BPHYT
_RS03205
Dihydropteroate synthase (
EC 2.5.1.15
)
BPHYT
_RS14160
FolM Alternative dihydrofolate reductase 1
BPHYT
_RS18580
Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)
No genes
Folate transporter 3
No genes
Folylpolyglutamate synthase (
EC 6.3.2.17
)
No genes
Formate--tetrahydrofolate ligase (
EC 6.3.4.3
)
No genes
GTP cyclohydrolase I (
EC 3.5.4.16
) type 1
BPHYT
_RS21405
GTP cyclohydrolase I (
EC 3.5.4.16
) type 2
BPHYT
_RS33570
Methionyl-tRNA formyltransferase (
EC 2.1.2.9
)
BPHYT
_RS01460
Methylenetetrahydrofolate dehydrogenase (NADP+) (
EC 1.5.1.5
)
BPHYT
_RS12865
Non functional Dihydropteroate synthase 2
No genes
Nucleoside triphosphate pyrophosphohydrolase MazG
No genes
Para-aminobenzoate synthase, amidotransferase component (
EC 2.6.1.85
)
BPHYT
_RS15045
Para-aminobenzoate synthase, aminase component (
EC 2.6.1.85
)
BPHYT
_RS03600
PqqC-like protein
No genes
Putative DHNTP pyrophosphatase
No genes
Related to Dihydropteroate synthase
No genes
Serine hydroxymethyltransferase (
EC 2.1.2.1
)
BPHYT
_RS01260
BPHYT
_RS03725
BPHYT
_RS25180
Substrate-specific component FolT of folate ECF transporter
No genes
Thymidine kinase (
EC 2.7.1.21
)
No genes
Thymidylate synthase (
EC 2.1.1.45
)
BPHYT
_RS14650
Thymidylate synthase thyX (EC 2.1.1.-)
No genes
Transaldolase (
EC 2.2.1.2
)
BPHYT
_RS06045
Transmembrane component of general energizing module of ECF transporters
No genes
Xanthosine/inosine triphosphate pyrophosphatase
No genes
alternate gene name: yzbB
BPHYT
_RS27845
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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