SEED Subsystem: DNA Repair Base Excision in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC BPHYT_RS26300
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD BPHYT_RS09215
DNA ligase (EC 6.5.1.2) BPHYT_RS12165
DNA polymerase I (EC 2.7.7.7) BPHYT_RS33610
DNA polymerase II (EC 2.7.7.7) BPHYT_RS23105
DNA-3-methyladenine glycosylase (EC 3.2.2.20) BPHYT_RS19065
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) BPHYT_RS12425
  BPHYT_RS19685
  BPHYT_RS24700
Endonuclease III (EC 4.2.99.18) BPHYT_RS06080
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) BPHYT_RS02870
Ku domain protein BPHYT_RS09210
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) BPHYT_RS12730
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 BPHYT_RS17415

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Or view this subsystem at the SEED (slow)