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SEED Subsystem: Ribosome LSU bacterial in
Shewanella sp. ANA-3
Experiments:
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Role
Gene
Name
Firmicutes ribosomal L7Ae family protein
No genes
LSU ribosomal protein L10p (P0)
Shewana3
_0190
rplJ
LSU ribosomal protein L11p (L12e)
Shewana3
_0188
rplK
LSU ribosomal protein L13p (L13Ae)
Shewana3
_0692
rplM
LSU ribosomal protein L14p (L23e)
Shewana3
_0209
rplN
LSU ribosomal protein L15p (L27Ae)
Shewana3
_0218
rplO
LSU ribosomal protein L16p (L10e)
Shewana3
_0206
rplP
LSU ribosomal protein L17p
Shewana3
_0225
rplQ
LSU ribosomal protein L18p (L5e)
Shewana3
_0215
rplR
LSU ribosomal protein L19p
Shewana3
_3014
rplS
LSU ribosomal protein L1p (L10Ae)
Shewana3
_0189
rplA
LSU ribosomal protein L20p
Shewana3
_2046
rplT
LSU ribosomal protein L21p
Shewana3
_3219
rplU
LSU ribosomal protein L22p (L17e)
Shewana3
_0204
rplV
LSU ribosomal protein L23p (L23Ae)
Shewana3
_0201
rplW
LSU ribosomal protein L24p (L26e)
Shewana3
_0210
rplX
LSU ribosomal protein L25p
Shewana3
_1892
LSU ribosomal protein L27p
Shewana3
_3218
rpmA
LSU ribosomal protein L28p
Shewana3
_3769
rpmB
LSU ribosomal protein L29p (L35e)
Shewana3
_0207
LSU ribosomal protein L2p (L8e)
Shewana3
_0202
rplB
LSU ribosomal protein L30p (L7e)
Shewana3
_0217
rpmD
LSU ribosomal protein L31p
No genes
LSU ribosomal protein L32p
No genes
LSU ribosomal protein L33p
No genes
LSU ribosomal protein L34p
No genes
LSU ribosomal protein L35p
Shewana3
_2045
rpmI
LSU ribosomal protein L36p
Shewana3
_0220
rpmJ
LSU ribosomal protein L3p (L3e)
Shewana3
_0199
rplC
LSU ribosomal protein L4p (L1e)
Shewana3
_0200
rplD
LSU ribosomal protein L5p (L11e)
Shewana3
_0211
rplE
LSU ribosomal protein L6p (L9e)
Shewana3
_0214
rplF
LSU ribosomal protein L7/L12 (P1/P2)
Shewana3
_0191
rplL
LSU ribosomal protein L9p
Shewana3
_0704
rplI
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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