SEED Subsystem: Nitrate and nitrite ammonification in Shewanella sp. ANA-3

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) No genes
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly Shewana3_0488
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly Shewana3_0487
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly Shewana3_0492
Cytochrome c-type protein NapC Shewana3_1902
Cytochrome c-type protein NrfB precursor Shewana3_3962
Cytochrome c552 precursor (EC 1.7.2.2) Shewana3_0658 nrfA
  Shewana3_2363
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) Shewana3_2784
Ferredoxin-type protein NapG (periplasmic nitrate reductase) Shewana3_3431 napG
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein No genes
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Shewana3_1901
  Shewana3_3433
Nitrate/nitrite response regulator protein Shewana3_0656
  Shewana3_3414
Nitrate/nitrite sensor protein (EC 2.7.3.-) Shewana3_0657
Nitrate/nitrite transporter No genes
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) No genes
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein Shewana3_0493
  Shewana3_3961
NrfD protein Shewana3_0494
  Shewana3_3960
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE Shewana3_1898
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Shewana3_1900
  Shewana3_3430
Polyferredoxin NapH (periplasmic nitrate reductase) Shewana3_3432 napH
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase beta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT No genes

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