SEED Subsystem: Photorespiration (oxidative C2 cycle) in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Glycine (N)  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) Pf6N2E2_5837 N.D.
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Pf6N2E2_4485 +0.2
  Pf6N2E2_5556 -6.0
Catalase (EC 1.11.1.6) Pf6N2E2_1252 -0.1
  Pf6N2E2_1898 +0.4
  Pf6N2E2_2199 -0.2
  Pf6N2E2_3430 -0.1
  Pf6N2E2_4170 +0.1
  Pf6N2E2_4886 -0.0
  Pf6N2E2_5074 +0.0
  Pf6N2E2_5769 +0.0
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) Pf6N2E2_4251 -0.1
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) Pf6N2E2_460 +0.5
  Pf6N2E2_5532 N.D.
Glycine cleavage system H protein Pf6N2E2_4486 -0.3
  Pf6N2E2_5559 -3.6
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Pf6N2E2_5558 -5.0
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE Pf6N2E2_136 -0.1
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF Pf6N2E2_135 -0.0
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Pf6N2E2_137 +0.1
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) Pf6N2E2_5839 +0.2
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) Pf6N2E2_4752 -0.3
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) Pf6N2E2_4089 -0.0
  Pf6N2E2_4821 +0.1
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) Pf6N2E2_4717 -0.8
  Pf6N2E2_5082 N.D.
  Pf6N2E2_5083 -0.3
  Pf6N2E2_5295 +0.1
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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