SEED Subsystem: DNA repair, bacterial in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name Ionizing radiation, 126.196 Gy,  
⨯
A/G-specific adenine glycosylase (EC 3.2.2.-) AO353_12050 +0.0
  AO353_12055 -0.1
ADA regulatory protein AO353_27015 +0.2
Alkylated DNA repair protein AlkB AO353_27010 -0.3
DNA mismatch repair endonuclease MutH No genes
DNA polymerase IV (EC 2.7.7.7) AO353_16910 -0.1
DNA polymerase-like protein MT3142 No genes
DNA polymerase-like protein PA0670 AO353_22710 -0.1
DNA recombination protein RmuC AO353_02560 -0.6
DNA recombination-dependent growth factor C AO353_02515 -0.6
DNA repair exonuclease family protein YhaO No genes
DNA repair protein RadA AO353_13980 -1.1
DNA repair protein RadC AO353_09220 -0.0
DNA repair protein RecN AO353_05660 -2.3
DNA-damage-inducible protein I No genes
DNA-damage-inducible protein J AO353_29090 N.D.
Endonuclease IV (EC 3.1.21.2) No genes
Endonuclease V (EC 3.1.21.7) No genes
Exodeoxyribonuclease III (EC 3.1.11.2) AO353_09250 -1.4
  AO353_27875 +0.0
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) AO353_15935 -0.3
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) AO353_06645 N.D.
Exonuclease SbcC AO353_23675 -0.0
  AO353_28050 -0.2
Exonuclease SbcD AO353_23680 +0.2
G:T/U mismatch-specific uracil/thymine DNA-glycosylase AO353_28115 +0.3
Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) No genes
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) AO353_15075 +0.1
  AO353_27015 +0.2
RecA protein AO353_16805 -2.7
Recombinational DNA repair protein RecT (prophage associated) No genes
SOS-response repressor and protease LexA (EC 3.4.21.88) AO353_00465 N.D.
  AO353_22700 -0.0
Single-stranded DNA-binding protein AO353_06845 N.D.
Very-short-patch mismatch repair endonuclease (G-T specific) No genes

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