SEED Subsystem: Polyhydroxybutyrate metabolism in Sinorhizobium meliloti 1021

Experiments:

Role Gene Name 5-Aminovaleric (C)  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) SM_b21632 +0.0
  SMc02227 -3.2
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) SMa1408 +0.1
  SMc04398 N.D.
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) SMc00727 -1.6
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) SM_b21632 +0.0
  SMc02227 -3.2
3-ketoacyl-CoA thiolase (EC 2.3.1.16) SMc00262 -0.5
Acetoacetyl-CoA reductase (EC 1.1.1.36) SMc03878 +0.8
Acetoacetyl-CoA synthetase (EC 6.2.1.16) SMa0567 +0.2
  SMc00774 -0.4
Acetyl-CoA acetyltransferase (EC 2.3.1.9) SMc03879 -5.4
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) SM_b21010 -0.7
  SMc01698 +0.4
D-beta-hydroxybutyrate permease No genes
Enoyl-CoA hydratase (EC 4.2.1.17) SM_b21632 +0.0
  SM_b21633 +0.3
  SMc00976 +1.4
  SMc01638 -0.0
  SMc01669 -0.1
  SMc01806 +0.1
Intracellular PHB depolymerase (EC 3.1.1.-) SMc02770 -0.5
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase SMc00296 -0.3
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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