SEED Subsystem: Glycine and Serine Utilization in Ralstonia sp. UNC404CL21Col

Experiments:

Role Gene Name Heptanoic (C)  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) ABZR87_RS22685 -0.1
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) ABZR87_RS03925 +1.1
Cystathionine beta-synthase (EC 4.2.1.22) No genes
Cystathionine gamma-lyase (EC 4.4.1.1) No genes
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) ABZR87_RS05285 +0.6
  ABZR87_RS05875 -0.2
  ABZR87_RS06255 +0.1
  ABZR87_RS17535 -0.4
  ABZR87_RS19060 +0.5
  ABZR87_RS21550 -0.8
  ABZR87_RS21670 -0.0
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator ABZR87_RS21895 -0.0
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter No genes
Glycerate kinase (EC 2.7.1.31) No genes
Glycine cleavage system H protein ABZR87_RS03930 +1.7
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) ABZR87_RS03935 +1.6
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) ABZR87_RS03940 +2.5
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) No genes
L-serine dehydratase, beta subunit (EC 4.3.1.17) No genes
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) ABZR87_RS09445 -5.3
Phosphoserine phosphatase (EC 3.1.3.3) ABZR87_RS00930 N.D.
  ABZR87_RS13250 -6.0
  ABZR87_RS20450 +0.1
Serine hydroxymethyltransferase (EC 2.1.2.1) ABZR87_RS08955 N.D.
Serine transporter No genes
Seryl-tRNA synthetase (EC 6.1.1.11) ABZR87_RS16025 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) ABZR87_RS17670 +0.2

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