SEED Subsystem: Chorismate Synthesis in Bifidobacterium breve UCC2003

Experiments:

Role Gene Name diet=HighFatHighSugar; sample=FecalPellet; mouse11; day1  
⨯
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.5.1.-) No genes
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) BBR_RS19190 -4.1
  BBR_RS19195 -0.0
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) No genes
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) No genes
3,7-dideoxy-D-threo-hepto-2, 6-diulosonate synthase (EC 4.2.3.-) No genes
3-dehydroquinate dehydratase I (EC 4.2.1.10) No genes
3-dehydroquinate dehydratase II (EC 4.2.1.10) BBR_RS15090 +1.2
3-dehydroquinate synthase (EC 4.2.3.4) BBR_RS15085 -4.8
4-amino, 4-deoxychorismate mutase (EC 5.4.99.-) No genes
4-amino, 4-deoxyprephenate dehydrogenase (EC 1.3.1.-) No genes
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) BBR_RS14370 -4.1
Arogenate dehydrogenase (EC 1.3.1.43) BBR_RS16675 -3.2
Chorismate mutase I (EC 5.4.99.5) BBR_RS11770 -1.7
Chorismate mutase II (EC 5.4.99.5) No genes
Chorismate synthase (EC 4.2.3.5) BBR_RS15080 -4.4
Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) No genes
Periplasmic chorismate mutase I precursor (EC 5.4.99.5) No genes
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43) No genes
Prephenate dehydratase (EC 4.2.1.51) BBR_RS16680 -5.0
Prephenate dehydrogenase (EC 1.3.1.12) No genes
Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) No genes
Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25) No genes
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) BBR_RS15520 -4.6
Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) No genes
Shikimate kinase I (EC 2.7.1.71) BBR_RS15085 -4.8
Shikimate kinase II (EC 2.7.1.71) No genes
Shikimate kinase III (EC 2.7.1.71) No genes
Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) No genes

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