SEED Subsystem: Denitrification in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Nitrite/ lactate media with Nitrite 20mM  
⨯
Copper-containing nitrite reductase (EC 1.7.2.1) Psest_2294 -0.0
Cytochrome cd1 nitrite reductase (EC:1.7.2.1) Psest_0815 -2.1
Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) Psest_3493 N.D.
  Psest_3495 +0.0
  Psest_0830 -3.2
  Psest_0839 +0.5
Nitric oxide -responding transcriptional regulator NnrR (Crp/Fnr family) No genes
Nitric oxide reductase activation protein NorD Psest_2289 +0.0
  Psest_0828 -3.2
Nitric oxide reductase activation protein NorE Psest_0813 -1.6
Nitric oxide reductase activation protein NorQ Psest_2290 -0.5
  Psest_0814 -2.1
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent No genes
Nitric-oxide reductase subunit B (EC 1.7.99.7) Psest_2291 -0.0
  Psest_0827 -3.0
Nitric-oxide reductase subunit C (EC 1.7.99.7) Psest_2292 -0.2
  Psest_0826 -2.8
Nitrite reductase accessory protein NirV No genes
Nitrous oxide reductase maturation periplasmic protein NosX No genes
Nitrous oxide reductase maturation protein NosD Psest_0794 -1.5
Nitrous oxide reductase maturation protein NosF (ATPase) Psest_0795 -2.1
Nitrous oxide reductase maturation protein NosR Psest_0792 -1.2
Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL Psest_0797 -1.5
Nitrous oxide reductase maturation transmembrane protein NosY Psest_0796 -1.7
Nitrous-oxide reductase (EC 1.7.99.6) Psest_0793 -1.4
NnrS protein involved in response to NO Psest_3754 +0.0
  Psest_4279 -0.0
  Psest_0799 -1.6
NnrT family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) No genes
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) No genes

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