SEED Subsystem: D-gluconate and ketogluconates metabolism in Pantoea sp. MT58

Experiments:

Role Gene Name Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50  
2,5-diketo-D-gluconate reductase A (EC 1.1.1.274) IAI47_03200 +0.0
2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) No genes
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, cytochrome c No genes
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, flavoprotein No genes
2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, gamma subunit No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) IAI47_18565 -0.2
2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) IAI47_00110 -1.8
5-keto-D-gluconate 5-reductase (EC 1.1.1.69) IAI47_11020 -0.1
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldA No genes
Broad-specificity glycerol dehydrogenase (EC 1.1.99.22), subunit SldB No genes
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c IAI47_16700 -0.0
  IAI47_17655 +1.1
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein IAI47_16705 -0.1
  IAI47_17660 +1.0
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit IAI47_16710 +0.1
  IAI47_17665 +1.0
Gluconate operon transcriptional repressor No genes
Gluconate permease IAI47_07160 +0.1
Gluconate permease, Bsu4004 homolog No genes
Gluconate transporter family protein No genes
Gluconate utilization system Gnt-I transcriptional repressor IAI47_01650 -2.0
Gluconokinase (EC 2.7.1.12) IAI47_01655 -0.2
Glucose 1-dehydrogenase (EC 1.1.1.47) IAI47_20845 -0.2
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, cytochrome c No genes
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, flavoprotein No genes
Glucose dehydrogenase (EC 1.1.99.10), membrane-bound, gamma subunit No genes
Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) IAI47_10020 -0.0
  IAI47_17585 +0.5
  IAI47_21150 +0.1
High-affinity gluconate transporter GntT IAI47_14085 +0.5
Hypothetical oxidoreductase YqhD (EC 1.1.-.-) No genes
Hypothetical transcriptional regulator YqhC IAI47_03205 -0.1
L-idonate 5-dehydrogenase (EC 1.1.1.264) No genes
L-idonate, D-gluconate, 5-keto-D-gluconate transporter No genes
Low-affinity gluconate/H+ symporter GntU IAI47_01660 +0.7
Positive regulator of L-idonate catabolism No genes
Predicted gluconate TRAP family transporter, DctM subunit No genes
Predicted gluconate TRAP family transporter, DctP subunit No genes
Predicted gluconate TRAP family transporter, DctQ subunit No genes

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