SEED Subsystem: Calvin-Benson cycle in Pantoea sp. MT58

Experiments:

Role Gene Name Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50  
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) IAI47_00820 +0.0
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) IAI47_02750 -1.1
Fructose-1,6-bisphosphatase, type V, archaeal (EC 3.1.3.11) No genes
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) No genes
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) IAI47_03695 N.D.
  IAI47_16500 -0.0
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) IAI47_08945 N.D.
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) No genes
Phosphoglycerate kinase (EC 2.7.2.3) IAI47_03690 N.D.
Phosphoribulokinase (EC 2.7.1.19) No genes
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown IAI47_01975 +0.0
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex No genes
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase No genes
Ribose 5-phosphate isomerase A (EC 5.3.1.6) IAI47_03720 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) IAI47_01910 N.D.
  IAI47_19235 +0.0
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37) No genes
Transketolase (EC 2.2.1.1) IAI47_03680 -1.4
  IAI47_05350 +0.1
Transketolase, C-terminal section (EC 2.2.1.1) IAI47_11790 +0.2
Transketolase, N-terminal section (EC 2.2.1.1) IAI47_11795 +1.2
Triosephosphate isomerase (EC 5.3.1.1) IAI47_00795 N.D.

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