SEED Subsystem: Oxidative stress in Pantoea sp. MT58

Experiments:

Role Gene Name Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50  
⨯
Alkyl hydroperoxide reductase subunit C-like protein IAI47_20230 +0.0
Catalase (EC 1.11.1.6) IAI47_07215 +0.1
  IAI47_10610 +0.2
  IAI47_10635 -0.1
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR IAI47_13860 N.D.
Ferroxidase (EC 1.16.3.1) IAI47_13195 +0.4
Fumarate and nitrate reduction regulatory protein IAI47_09580 -4.2
Heme oxygenase HemO, associated with heme uptake No genes
Hydrogen peroxide-inducible genes activator IAI47_00930 -2.5
  IAI47_09345 -0.6
  IAI47_19115 -0.3
Iron-binding ferritin-like antioxidant protein IAI47_13195 +0.4
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) IAI47_18725 N.D.
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR IAI47_02620 +1.4
NnrS protein involved in response to NO No genes
Non-specific DNA-binding protein Dps IAI47_13195 +0.4
Organic hydroperoxide resistance protein IAI47_18670 +0.1
Organic hydroperoxide resistance transcriptional regulator IAI47_11110 -0.0
  IAI47_18675 -0.1
Paraquat-inducible protein A IAI47_08690 +0.2
  IAI47_12680 -0.3
Paraquat-inducible protein B IAI47_08685 +0.1
  IAI47_12670 +0.2
  IAI47_12675 -0.5
Peroxidase (EC 1.11.1.7) IAI47_07215 +0.1
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) No genes
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR IAI47_17765 +0.4
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS IAI47_17770 +0.2
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) IAI47_10745 -0.4
Superoxide dismutase [Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR IAI47_17875 +0.3
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family No genes
transcriptional regulator, Fur family No genes

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